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Puumala virus segment S, complete sequence

发布时间：2026/4/7 8:03:18 阅读次数：9

Puumala virus segment S, complete sequence
NCBI Reference Sequence: NC_005224.1
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LOCUS       NC_005224               1830 bp    cRNA    linear   VRL 13-AUG-2018
DEFINITION Puumala virus segment S, complete sequence.
ACCESSION   NC_005224
VERSION     NC_005224.1
DBLINK      BioProject: PRJNA485481
KEYWORDS    RefSeq; nucleocapsid protein.
SOURCE      Orthohantavirus puumalaense
ORGANISM Orthohantavirus puumalaense
            Viruses; Riboviria; Orthornavirae; Negarnaviricota;
            Polyploviricotina; Ellioviricetes; Bunyavirales; Hantaviridae;
            Mammantavirinae; Orthohantavirus.
REFERENCE   1
AUTHORS   Vapalahti,O., Kallio-Kokko,H., Salonen,E.M.,
            Brummer-Korvenkontio,M. and Vaheri,A.
TITLE     Cloning and sequencing of Puumala virus Sotkamo strain S and M RNA
            segments: evidence for strain variation in hantaviruses and
            expression of the nucleocapsid protein
JOURNAL   J. Gen. Virol. 73 (Pt 4), 829-838 (1992)
   PUBMED   1353107
REFERENCE   2 (bases 1 to 1830)
CONSRTM   NCBI Genome Project
TITLE     Direct Submission
JOURNAL   Submitted (12-AUG-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3 (bases 1 to 1830)
AUTHORS   Vapalahti,O.P.
TITLE     Direct Submission
JOURNAL   Submitted (22-JUL-1991) O.P. Vapalahti, Dept. of Virology,
            University of Helsinki, Haartmaninkatu 3, 00290 Helsinki, FINLANDCOMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from X61035.
            See also X61034. Sotkamo strain was derived from an infected bank
            vole (C.glareolus) and adapted to Vero E6 cells, amplified by PCR.
            COMPLETENESS: full length.FEATURES             Location/Qualifiers     source          1..1830
                     /organism="Orthohantavirus puumalaense"
                     /mol_type="viral cRNA"
                     /strain="Sotkamo"
                     /db_xref="taxon:3052493"
                     /segment="S"
                     /lab_host="Vero E6"     gene            43..1344
                     /locus_tag="PUUVsSgp1"
                     /db_xref="GeneID:2943083"     CDS             43..1344
                     /locus_tag="PUUVsSgp1"
                     /codon_start=1
                     /product="nucleocapsid protein"
                     /protein_id="NP_941984.1"
                     /db_xref="GOA:P27313"
                     /db_xref="UniProtKB/Swiss-Prot:P27313"
                     /db_xref="GeneID:2943083"
                     /translation="MSDLTDIQEDITRHEQQLIVARQKLKDAERAVEVDPDDVNKNTL
                     QARQQTVSALEDKLADYKRRMADAVSRKKMDTKPTDPTGIEPDDHLKERSSLRYGNVL
                     DVNAIDIEEPSGQTADWYTIGVYVIGFTLPIILKALYMLSTRGRQTVKENKGTRIRFK
                     DDTSFEDINGIRRPKHLYVSMPTAQSTMKAEELTPGRFRTIVCGLFPTQIQVRNIMSP
                     VMGVIGFSFFVKDWSERIREFMEKECPFIKPEVKPGTPAQEIEMLKRNKIYFMQRQDV
                     LDKNHVADIDKLIDYAASGDPTSPDNIDSPNAPWVFACAPDRCPPTCIYVAGMAELGA
                     FFSILQDMRNTIMASKTVGTAEEKLKKKSSFYQSYLRRTQSMGIQLDQRIILLFMLEW
                     GKEMVDHFHLGDDMDPELRGLAQALIDQKVKEISNQEPLKI"     gene            83..355
                     /locus_tag="PUUVsSgp2"
                     /db_xref="GeneID:11293625"     CDS             83..355
                     /locus_tag="PUUVsSgp2"
                     /experiment="EXISTENCE: Western blot [PMID:17705180]"
                     /codon_start=1
                     /product="nonstructural protein"
                     /protein_id="YP_004928150.1"
                     /db_xref="GeneID:11293625"
                     /translation="MNSNLLLPDKNLRMQREQWKWTQMTLIKTHCKPGNKQCQHWRTN
                     SQTTREGWQMLCPGKKWILNLLTRLGLNLMTTSRRDQALGMEMSLM"ORIGIN              1 tagtagtaga ctccttgaaa agctactacg agaaagtctg gaatgagtga cttgacagat
       61 atccaagagg atataacccg ccatgaacag caacttattg ttgccagaca aaaacttaag
      121 gatgcagaga gagcagtgga agtggaccca gatgacgtta ataaaaacac actgcaagcc
      181 aggcaacaaa cagtgtcagc actggaggac aaactcgcag actacaagag aaggatggca
      241 gatgctgtgt ccaggaaaaa aatggatact aaacctactg acccgactgg gattgaacct
      301 gatgaccacc tcaaggagag atcaagcctt aggtatggaa atgtccttga tgtaaatgca
      361 attgacattg aagaaccaag tggccaaaca gcagattggt atacaattgg agtgtatgtg
      421 atagggttca cacttcctat catccttaaa gctttataca tgctctcaac gcgtgggaga
      481 cagactgtaa aggaaaataa ggggacacgt ataaggttta aggatgatac atcatttgaa
      541 gacatcaatg gcataaggag accaaagcat ttatatgttt ctatgcctac tgcccagtca
      601 actatgaaag cagaagaact cacacctggc agatttcgca caatagtatg tggtcttttt
      661 cccactcaga tccaggttcg taacatcatg agtccagtta tgggggtcat tggtttttca
      721 ttctttgtga aggattggtc tgagagaatc agagagttca tggaaaaaga gtgcccattc
      781 ataaagcctg aagtaaaacc aggcacacca gcacaggaga ttgagatgtt aaaaagaaat
      841 aagatctact ttatgcagcg ccaggatgtg cttgacaaaa atcatgtggc agacattgac
      901 aagttaattg actatgcagc ctctggagac cctacatcac ctgacaacat tgattcgcct
      961 aatgcaccat gggtctttgc atgtgcacca gaccgatgcc caccaacatg tatctatgtt
     1021 gcagggatgg cagagcttgg ggcctttttt tcaatattgc aggacatgag aaacacaata
     1081 atggcatcta agactgttgg cacagcagaa gagaaattaa agaaaaagtc ttccttttac
     1141 caatcttacc tgcgtcgaac tcaatcaatg ggaattcagc ttgatcaaag aattatcctc
     1201 ttgtttatgt tggaatgggg caaagagatg gtagatcact tccatcttgg tgatgatatg
     1261 gatccagagc tcagaggtct tgcacaggca ctgatagatc aaaaggtcaa ggaaatatcg
     1321 aaccaggaac cactaaagat ataattcctt aattacatat gcactgatta tagatgtagt
     1381 gagttgttaa catgtagaca tattatatat tcagggatca tatgtgctag ttgtttacta
     1441 atcaaattat acgggtttat agttgcagtt atcagggtca ttaattaaca aactaatcag
     1501 ggttaaacta gaaatgtagc attataagta catatcaact aataacaatc aatacaggga
     1561 tcactaatgg cagttatgaa tatattaaga cattatttta taatcattat ctaattagca
     1621 ttatgtaggt taaggttgta ttttattatt taatgggccc aaacatgtga aactgagctg
     1681 tcctttttcc ttttcatcac tttttttctc aaaacttatt catttctacc tcagtgtgct
     1741 tatatatatg caagtagcat atatataagt acacaatata ctacctcaac atgctgattt
     1801 cttgattgct tttcaaggag tctactacta
//
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