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Human papilloma virus type 59, complete viral genome
GenBank: X77858.1
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LOCUS X77858 7896 bp DNA linear VRL 18-APR-2005
DEFINITION Human papilloma virus type 59, complete viral genome.
ACCESSION X77858
VERSION X77858.1
KEYWORDS complete genome.
SOURCE human papillomavirus 59
ORGANISM human papillomavirus 59
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Alphapapillomavirus.
REFERENCE 1
AUTHORS Rho,J., Roy-Burman,A., Kim,H., de Villiers,E.M., Matsukura,T. and
Choe,J.
TITLE Nucleotide sequence and phylogenetic classification of human
papillomavirus type 59
JOURNAL Virology 203 (1), 158-161 (1994)
PUBMED 8030272
REFERENCE 2 (bases 1 to 7896)
AUTHORS Choe,J.
TITLE Direct Submission
JOURNAL Submitted (25-FEB-1994) J. Choe, C/O Hajo Delius, DKFZ - Abt. ATV,
Im Neuenheimer Feld 506, 69120 Heidelberg, FRG
FEATURES Location/Qualifiers
source 1..7896
/organism="human papillomavirus 59"
/mol_type="genomic DNA"
/db_xref="taxon:37115"
gene 55..537
/gene="ORF putative E6"
CDS 55..537
/gene="ORF putative E6"
/codon_start=1
/protein_id="CAA54849.1"
/db_xref="GOA:Q81964"
/db_xref="InterPro:IPR001334"
/db_xref="UniProtKB/TrEMBL:Q81964"
/translation="MARFEDPTQRPYKLPDLSTTLNIPLHDIRINCVFCKGELQEREV
FEFAFNDLFIVYRDCTPYAACLKCISFYARVRELRYYRDSVYGETLEAETKTPLHELL
IRCYRCLKPLCPTDKLKHITEKRRFHNIAGIYTGQCRGCRTRARHLRQQRQARSETLV
"
gene 542..865
/gene="ORF putative E7"
CDS 542..865
/gene="ORF putative E7"
/codon_start=1
/protein_id="CAA54850.1"
/db_xref="GOA:Q81965"
/db_xref="InterPro:IPR000148"
/db_xref="UniProtKB/TrEMBL:Q81965"
/translation="MHGPKATLCDIVLDLEPQNYEEVDLVCYEQLPDSDSENEKDEPD
GVNHPLLLARRAEPQRHNIVCVCCKCNNQLQLVVETSQDGLRALQQLFMDTLSFVCPL
CAANQ"
gene 872..2806
/gene="ORF putative E1"
CDS 872..2806
/gene="ORF putative E1"
/codon_start=1
/protein_id="CAA54851.1"
/db_xref="GOA:Q81966"
/db_xref="InterPro:IPR001177"
/db_xref="InterPro:IPR014000"
/db_xref="InterPro:IPR014015"
/db_xref="InterPro:IPR016393"
/db_xref="UniProtKB/Swiss-Prot:Q81966"
/translation="MADSEGTDGEGTGCNGWFFVQAIVDKKTGDKISDDEDENATDTG
SDLVDFIDDTTTICVQAERETAQALFNVQEAQRDAREMHVLKRKFGCSIENSSEKAAA
GKKAKSPLQEISVNVNHPKVKRRLITVPDSGYGYSEVEMLETQVTVENTGNGDSNGSV
CSDSQIDCSDSSNMDVENIVPTSPTNQLLQLLHSKNKKAAMYAKFKELYGLSFQDLVR
TFKSDRTTCSDWVTAIFGVNPTVAEGFKTLIQPYVLYAHIQCLDCAWGVVILALLRYK
CGKNRITVAKGLSTLLHVPDTCMLIEPPKLRSGVAALYWYRTGMSNISEVIGETPEWI
QRLTIIQHGVDDSVFDLSEMIQWAFDNDLTDESDIAYEYALIADSNSNAAAFLKSNCQ
AKYLKDCAVMCRHYKRAQKRQMSMSQWIKWRCDKIEEGGDWKPIVQFLRYQGVEFITF
LCALKDFLKGTPKRNCIVLCGPANTGKSYFGMSLLHFLQGTVISHVNSNSHFWLEPLT
DRKLAMLDDATDSCWTYFDTYMRNALDGNPISVDRKHRHLVQIKCPPMLITSNTNPVT
DNRWPYLNSRLMVFKFPNKLPFDKNRNPVYTINDRNWKCFFERTWCRLDLNEEEEDAD
SDGHPFAAFKCVTGSNIRTL"
gene 2736..3848
/gene="ORF putative E2"
CDS 2736..3848
/gene="ORF putative E2"
/codon_start=1
/protein_id="CAA54852.1"
/db_xref="GOA:Q81967"
/db_xref="HSSP:1JJ4"
/db_xref="InterPro:IPR000427"
/db_xref="InterPro:IPR001866"
/db_xref="InterPro:IPR009021"
/db_xref="InterPro:IPR012677"
/db_xref="UniProtKB/TrEMBL:Q81967"
/translation="MQTVMDTLSQRLSVLQDQILEHYENDSKDINEHINYWKLVRMEN
VILFAARENNIHTLNHQVVPTFLVSKNKACEAIELQSNRTSTVMPCFLKHFLGAVCHS
SWHVSCIVHCSFLNSVCAKLSNAICSKENTMHYTSWTFIYYVNDVGQWCKTTGNVDFW
GLYYKVEEEQVYYVKFIHDAKKYGTTDKWEVHYNGKVIDCYDSMCSTSDEQVSTAGSS
EQLSYPSATPPEATYLGPQTWNRQTKTGKRPRQCGYTQHPQSTSVSVDYCDNPVVRLH
PGNNPRRHIPCSNTTPIIHLKGDKNGLKCLRYRLRKVHWLFENISSTWHWTGNRGSAK
TGILTLTYTSETQRNEFLDTVKIPNSVQIHVGYMSV"
gene 3268..3615
/gene="ORF putative E4"
CDS 3268..3615
/gene="ORF putative E4"
/codon_start=1
/protein_id="CAA54853.1"
/db_xref="InterPro:IPR003861"
/db_xref="UniProtKB/TrEMBL:Q76QV7"
/translation="MMPKNMGLQTSGKCIIMARLLIVMTLCAVPVTSKYPLLDLLSNY
HTPPQRPPKPRTWAPKRGTVRRRLESDQDSVDTHSTLSLPACQWTTVTTQSSVCIQAT
TRDGTSLAVTLRL"
gene 3908..4129
/gene="ORF putative E5"
CDS 3908..4129
/gene="ORF putative E5"
/codon_start=1
/protein_id="CAA54854.1"
/db_xref="InterPro:IPR004270"
/db_xref="UniProtKB/TrEMBL:Q81969"
/translation="MITLVFVCCVCVCLCVCCNVPLLQSVYMCAYTWLLVFVYIVVIT
SSYECFLLYILFFIIPLLLLYAHAILSIQ"
gene 4231..5625
/gene="ORF putative L2"
CDS 4231..5625
/gene="ORF putative L2"
/codon_start=1
/protein_id="CAA54855.1"
/db_xref="GOA:Q81970"
/db_xref="InterPro:IPR000784"
/db_xref="UniProtKB/TrEMBL:Q81970"
/translation="MVSHRAARRKRASATDLYKTCKQAGTCPSDVINKVEGTTLADKI
LQWTSLGIFLGGLGIGTGSGTGGRTGYIPLGGRTNTIVDVSPAKPPVVIEPVGPTDPS
IVTLVEDSSVITSGAPAPTFTGTSGFEISTSSTTTPAVLDITPTSSVQISSSSFINPA
FTDPSVIEVPQTGEISGNILISTPTSGAHGYEEIPMQTFATEGTGLEPISSTPNPTVR
RVAGPRLYSRANQQVRVSNADFLTRPSTFVTYDNPAYDPIDTTLTFDPSSEVPDPDFM
DIVRLHRPALTSRRSTVRFSRLGQRATMFTRSGKQIGARVHFYHDISPIPHAEDIELQ
PLVSSQAATDDIYDIYADITDEAPTSTANTAFTIPKSSFQSLSLTRSASSTFSNVTVP
LATAWDVPVNTGPDIVLPNTNIVEPTYSTTPFTTIQSINIEGTNYFLWPIYYFLPRKR
KRVPYFFTDGSMAF"
gene 5606..7132
/gene="ORF putative L1"
CDS 5606..7132
/gene="ORF putative L1"
/codon_start=1
/protein_id="CAA54856.1"
/db_xref="GOA:Q81971"
/db_xref="HSSP:1DZL"
/db_xref="InterPro:IPR002210"
/db_xref="InterPro:IPR011222"
/db_xref="UniProtKB/TrEMBL:Q81971"
/translation="MALWRSSDNKVYLPPPSVAKVVSTDEYVTRTSIFYHAGSSRLLT
VGHPYFKVPKGGNGRQDVPKVSAYQYRVFRVKLPDPNKFGLPDNTVYDPNSQRLVWAC
VGVEIGRGQPLGVGLSGHPLYNKLDDTENSHVASAVDTKDTRDNVSVDYKQTQLCIIG
CVPAIGEHWTKGTACKPTTVVQGDCPPLELINTPIEDGDMVDTGYGAMDFKLLQDNKS
EVPLDICQSICKYPDYLQMSADAYGDSMFFCLRREQVFARHFWNRSGTMGDQLPESLY
IKGTDIRANPGSYLYSPSPSGSVVTSDSQLFNKPYWLHKAQGLNNGICWHNQLFLTVV
DTTRSTNLSVCASTTSSIPNVYTPTSFKEYARHVEEFDLQFIFQLCKITLTTEVMSYI
HNMNTTILEDWNFGVTPPPTASLVDTYRFVQSAAVTCQKDTAPPVKQDPYDKLKFWPV
DLKERFSADLDQFPLGRKFLLQLGARPKPTIGPRKRAAPAPTSTPSPKRVKRRKSSRK
"
ORIGIN
1 gttaagaccg aaaacggtgc atataaaggt agttgaaaag aaaagggcaa cggcatggca
61 cgctttgagg atcctacaca acgaccatac aaactgcctg atttgagcac aacattgaat
121 attcctctgc atgatattcg catcaattgt gtgttttgca aaggggaact gcaagaaaga
181 gaggtatttg aatttgcttt taatgactta tttatagtgt atagagactg tacaccgtat
241 gcagcgtgtc tgaaatgcat ttcattttat gcaagagtaa gagaattaag atattataga
301 gattccgtgt atggagaaac attagaggct gaaaccaaga caccgttaca tgagctgctg
361 atacgctgtt atagatgcct aaaacctcta tgtccaacag ataaattaaa gcatataact
421 gaaaaaagaa gattccataa tatagctgga atatatacag gacagtgtcg tgggtgtcgg
481 acccgagcaa gacacctaag acagcaacga caagcgcgta gtgaaacact ggtgtaaaac
541 aatgcatgga ccaaaagcaa cactttgtga cattgtttta gatttggaac cacaaaatta
601 tgaggaagtt gaccttgtgt gctacgagca attacctgac tccgactccg agaatgaaaa
661 agatgaacca gatggagtta atcatccttt gctactagct agacgagctg aaccacagcg
721 tcacaacatt gtgtgtgtgt gttgtaagtg taataatcaa cttcagctag tagtagaaac
781 ctcgcaagac ggattgcgag ccttacagca gctgtttatg gacacactat cctttgtgtg
841 tcctttgtgt gcagcaaacc agtaacctgc aatggccgat tcggaaggta cagatgggga
901 agggacgggg tgcaatggat ggttttttgt gcaggcaata gtagataaaa aaacaggtga
961 caaaatttca gatgacgagg atgaaaatgc aacagataca ggttcagact tggtagattt
1021 tattgatgat accacaacaa tttgtgtaca ggcagagcgc gagacagcac aggccttgtt
1081 taatgtgcag gaagcccaaa gggatgcacg ggaaatgcat gttttaaaac gaaagtttgg
1141 gtgcagtata gaaaacagta gtgagaaagc ggcggcagga aaaaaagcta agtcaccatt
1201 acaagaaata tcagtaaatg ttaaccaccc aaaagtaaaa agaaggttaa taacagtgcc
1261 agacagcggc tatggctatt ctgaagtgga aatgctcgag actcaggtaa ccgtggagaa
1321 tactggaaat ggggatagca atggcagtgt ttgtagcgac agtcaaatag actgtagcga
1381 cagcagtaac atggatgttg aaaacatagt tccaacatcc cccactaatc aattgttaca
1441 gttattacat agcaaaaata agaaagcagc tatgtatgca aaatttaaag aattgtatgg
1501 gttatcattt caagatttgg ttaggacatt taaaagtgac agaactacct gtagcgattg
1561 ggtaaccgcc atttttggtg ttaatccaac tgtagcagaa ggatttaaaa cattaataca
1621 accctatgtg ctatatgcac atatacaatg cttagattgt gcatggggag tagtaatatt
1681 agcattatta agatataaat gtggaaaaaa tagaataaca gttgcaaaag gacttagcac
1741 attactacat gtaccagata cgtgcatgtt aattgaacca cccaaattgc gtagtggtgt
1801 tgcagcacta tattggtaca gaacaggaat gtccaatatt agtgaagtta taggggaaac
1861 gcccgaatgg atacaaagac taacaattat acaacatgga gttgatgata gcgtgtttga
1921 cctgtcagaa atgatacaat gggcgtttga taatgaccta acagatgaaa gtgatattgc
1981 atatgaatat gcattaatag cagatagtaa tagtaacgcc gctgcatttt taaaaagcaa
2041 ctgccaggca aaatacctaa aagattgtgc agttatgtgt aggcattata aaagagcaca
2101 aaaaagacaa atgagtatgt cacagtggat aaaatggaga tgtgataaaa tagaagaggg
2161 gggagattgg aaacccatag tacaattttt aagatatcaa ggagtagaat ttataacgtt
2221 tttatgtgca ttaaaagatt ttttaaaagg taccccaaaa agaaattgca ttgtgctgtg
2281 tgggccagca aatacaggca agtcatactt tggaatgagc ctgctacatt ttttacaagg
2341 aactgtaatt tcacatgtaa attcaaatag tcacttttgg ctagaacctt taacagatcg
2401 taaattagct atgctagacg atgcaacaga tagttgttgg acatattttg atacatatat
2461 gcgaaatgct ttggatggca atcctataag tgtagataga aagcataggc acctagtaca
2521 aattaaatgt ccaccaatgc ttattacatc aaatacaaat ccagttacag ataacaggtg
2581 gccatattta aatagcagat taatggtatt taaatttcca aacaaattgc catttgacaa
2641 aaatagaaat ccagtatata caattaatga cagaaactgg aaatgttttt ttgaaaggac
2701 gtggtgcaga ttagatttga acgaggaaga ggaagatgca gacagtgatg gacacccttt
2761 cgcagcgttt aagtgtgtta caggatcaaa tattagaaca ttatgaaaac gatagtaaag
2821 acattaatga acacataaac tattggaaac tggtgcgtat ggaaaatgta attttatttg
2881 cagcaagaga gaacaatata catacattaa accaccaggt ggtgccaacg tttttggtgt
2941 ctaaaaacaa ggcatgtgaa gctattgaac tgcagtcaaa ccgtacttcc actgtaatgc
3001 cctgtttttt aaaacatttt ttaggtgctg tttgccatag ttcttggcat gtttcttgca
3061 ttgtccattg ctcattttta aactcagttt gtgccaaact ctctaacgcc atctgcagca
3121 aggaaaacac aatgcattac acaagctgga catttatata ttatgtaaat gatgtaggac
3181 agtggtgtaa aaccacagga aatgtggact tttggggact atattataaa gtggaagagg
3241 aacaggtgta ctatgtaaaa tttatacatg atgccaaaaa atatgggact acagacaagt
3301 gggaagtgca ttataatggc aaggttattg attgttatga ctctatgtgc agtaccagtg
3361 acgagcaagt atccactgct ggatcttctg agcaactatc atacccctcc gcaacgcccc
3421 ccgaagccac gtacttgggc ccccaaacgt ggaaccgtca gacgaagact ggaaagcgac
3481 caagacagtg tggatacaca cagcaccctc agtctaccag cgtgtcagtg gactactgtg
3541 acaacccagt cgtccgtttg catccaggca acaacccgcg acggcacatc ccttgcagta
3601 acactacgcc tataatacac ttaaaaggtg acaaaaatgg ccttaagtgt ttaaggtata
3661 gattaagaaa agtacactgg ttatttgaaa atatttcctc tacctggcat tggacaggaa
3721 acagaggatc agccaaaaca ggcattttaa cattaacata tacaagcgaa acacaacgca
3781 atgaattttt agatactgta aaaattccta atagtgtaca aatacatgtt gggtatatga
3841 gtgtgtaatg gttgttatgc aaatgtaaca caagccaata ctgctgctat attgtatagc
3901 tgaggaaatg ataacccttg tatttgtgtg ttgtgtttgt gtttgcttgt gtgtgtgttg
3961 caatgtcccg cttctgcaat ctgtctatat gtgtgcatat acatggttac tagtatttgt
4021 gtatattgtg gttatcacct cctcatatga gtgtttttta ctatatatat tgttttttat
4081 aattccactg ttactactat atgcccatgc aatactgtcc atacaataat tgctgtatat
4141 tgtaaattac attgcactgt attgtacagt atattttaaa cacattatta tttttgttag
4201 gtgttggttt tgttacattt ataataaaac atggtttccc atcgtgctgc tcgtcgtaaa
4261 cgtgcctcag caacagactt atataaaact tgcaagcagg caggtacatg cccttctgat
4321 gttattaata aagttgaagg tacaacttta gctgataaaa tattgcagtg gaccagccta
4381 ggaatatttt taggtggact aggtattggt actggatctg gtaccggtgg cagaacaggg
4441 tacatacctt taggggggcg tacaaacact atagtagatg tatcgcctgc taaaccacca
4501 gtagttattg aacctgttgg acctacagat ccatctatag ttacattagt tgaggattct
4561 agtgttataa catctggagc ccctgcccca acatttacag gtacttcagg atttgaaata
4621 tctacctcta gtacaacaac accagctgtt ttggatataa ccccaacctc ttctgttcaa
4681 attagtagct ctagttttat aaatcctgca tttacagacc cttctgtcat tgaggttccc
4741 caaacaggtg aaatttctgg taatatatta attagtaccc ctacctctgg tgcacatggc
4801 tatgaagaaa ttccaatgca aacgtttgct acggaaggta ctggtttgga acccattagc
4861 agtaccccca atccaacagt acgtcgtgtg gctggaccta gattgtacag tagggctaat
4921 caacaagttc gggtgtctaa cgctgacttt ttaacacgtc catccacatt tgttacatat
4981 gataaccctg cttatgatcc aattgatact acattaactt ttgacccctc atcagaggtt
5041 ccagacccgg actttatgga tatagttcgt ttgcataggc ctgcattaac atccagacgc
5101 agcactgtaa ggtttagtag gctaggacaa cgggcaacca tgtttacccg tagtggtaaa
5161 caaattgggg cccgtgtaca tttttatcat gatataagcc ctataccaca tgctgaagat
5221 attgaattgc aacctcttgt ttcttcccag gctgctactg atgatatata tgatatatat
5281 gcagatatta cagatgaagc acctactagt actgccaaca ctgcatttac aattcctaaa
5341 tcttcttttc aaagtttgtc attaacacgg tcggcatcta gcaccttttc aaatgtaact
5401 gttcctttgg ctactgcctg ggatgttcct gtaaatacag gacccgatat agttttacct
5461 aatactaata ttgttgaacc cacttattct actacaccct ttaccaccat acagtctatt
5521 aatatagaag gcacaaatta ttttttatgg cctatatatt attttttacc tcgtaaacgt
5581 aaacgtgttc cctatttttt tacagatggc tctatggcgt tctagtgaca acaaggtgta
5641 tctacctcca ccttcggtag ctaaggttgt cagcactgat gagtatgtca cccgtaccag
5701 tattttctac cacgcaggca gttccagact tcttacagtt ggacatccat attttaaagt
5761 acctaaaggt ggtaatggta gacaggatgt tcctaaggtg tctgcatatc aatacagagt
5821 atttagggtt aagttacctg atcccaataa atttggcctt ccagataaca cagtatatga
5881 tcctaactct caacgcttgg tctgggcctg tgtaggtgtt gaaatcggtc ggggccaacc
5941 tttaggggta ggactcagtg gtcatccatt atataataaa ttggatgaca ctgaaaactc
6001 tcatgtagca tctgctgttg ataccaaaga tacacgtgat aatgtatctg tggattataa
6061 acaaactcag ctgtgtatta ttggctgtgt acctgccatt ggagaacact ggacaaaggg
6121 cactgcttgt aagcctacta ctgtggttca gggcgattgt cctccactag aattaataaa
6181 tacaccaatt gaagatggtg atatggtaga cacaggatat ggggctatgg actttaaatt
6241 gttgcaggat aacaaaagtg aagtaccatt ggatatttgt cagtctattt gtaaatatcc
6301 tgattattta caaatgtcag cagatgctta tggagacagt atgttttttt gtttaaggcg
6361 agaacaggtt tttgccagac atttttggaa tagatctggt actatgggtg atcaacttcc
6421 tgaatcacta tatattaaag gtactgacat acgtgccaac ccaggcagtt atttatattc
6481 cccttcccca agtgggtctg tggttacttc tgattcacaa ttatttaata aaccatattg
6541 gctgcacaag gctcagggtt taaacaatgg tatatgttgg cacaatcaat tgtttttaac
6601 agttgtagat actactcgca gcaccaatct ttctgtgtgt gcttctacta cttcttctat
6661 tcctaatgta tacacaccta ccagttttaa agaatatgcc agacatgtgg aggaatttga
6721 tttgcagttt atatttcaac tgtgtaaaat aacattaact acagaggtaa tgtcatacat
6781 tcataatatg aataccacta ttttggagga ttggaatttt ggtgttacac cacctcctac
6841 tgctagttta gttgacacat accgttttgt tcaatctgct gctgtaactt gtcaaaagga
6901 caccgcaccg ccagttaaac aggaccctta tgacaaacta aagttttggc ctgtagatct
6961 taaggaaagg ttttctgcag atcttgatca gtttcctttg ggacgtaaat ttttattgca
7021 attaggagct agacctaagc ccactatagg cccacgcaaa cgtgcagcgc ctgcccctac
7081 ctctacccca tcaccaaaac gtgttaagcg tcgcaagtct tccagaaaat agtgttgttt
7141 gttatgtgtt tgtatgtgtg catgttgtat gttttgtatt gtttgcctgt ttgtatgttg
7201 tgtatatgta catgtttgtt tgtctgctgt atgtgtgtat ttgtttttgt acataataaa
7261 gtatgcatga cagtttcatg tgtggttgca cccaatgagt aaggtactgt ccctttattg
7321 tttctttgtc cttattacac attattacac attgccctac ttacataggt gtgtttgttc
7381 cttcattttg tcctgaatgt ccagttttgc atttgcacat tatatggcgt ccattttatc
7441 ctttaaatcc tccattttgc tgtgcaaccg ttttcggtta ccttggttta accttacctt
7501 tttgaacaat taatctgttt aaacatcagc aaaacagtta atccccatct tgtttcctcc
7561 tacacgccta gactactaac acaacttaca aacgccaaat agttagtcat catcctgtcc
7621 aggtgcactc taacaatact tgcataactt tggtggcgcc cttgttaata aaacagcttt
7681 taggcacata ttttcactgt ttttactact ttaattgcat aattggcttg caaaactact
7741 gtgcaatcca agaatgtgtc tataatttat tgtaaaaaac atgactaagg tttttgtcat
7801 tgttaagcaa ccgaaaaagg tcgggcaagt acatgcacac tttctactta ttacttttta
7861 caatcatagt aataaaaaag ggtgtaaccg aaaacg
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