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Human papillomavirus type 58 complete genome
GenBank: D90400.1
FASTA Graphics
LOCUS PPH58 7824 bp DNA circular VRL 24-JUL-2016
DEFINITION Human papillomavirus type 58 complete genome.
ACCESSION D90400
VERSION D90400.1
KEYWORDS .
SOURCE human papillomavirus 58
ORGANISM human papillomavirus 58
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Papovaviricetes; Zurhausenvirales; Papillomaviridae;
Firstpapillomavirinae; Alphapapillomavirus.
REFERENCE 1 (bases 1 to 7824)
AUTHORS Kirii,Y., Iwamoto,S. and Matsukura,T.
TITLE Human papillomavirus type 58 DNA sequence
JOURNAL Virology 185 (1), 424-427 (1991)
PUBMED 1656594
COMMENT Data kindly submitted in computer readable form by: Yasuyuki Kirii
Kanebo Institute for Cancer Research
1-5-90 Tomobuchi-cho
Miyakojima-ku, Osaka 534
Japan.
FEATURES Location/Qualifiers
source 1..7824
/organism="human papillomavirus 58"
/mol_type="genomic DNA"
/isolate="patient specimen GN479"
/db_xref="taxon:10598"
/note="HPV58"
regulatory 72..77
/regulatory_class="TATA_box"
CDS 110..559
/note="unnamed protein product; open reading frame E6"
/codon_start=1
/protein_id="BAA31845.1"
/translation="MFQDAEEKPRTLHDLCQALETSVHEIELKCVECKKTLQRSEVYD
FVFADLRIVYRDGNPFAVCKVCLRLLSKISEYRHYNYSLYGDTLEQTLKKCLNEILIR
CIICQRPLCPQEKKRHVDLNKRFHNISGRWTGRCAVCWRPRRRQTQV"
CDS 574..870
/note="unnamed protein product; open reading frame E7"
/codon_start=1
/protein_id="BAA31846.1"
/translation="MRGNNPTLREYILDLHPEPTDLFCYEQLCDSSDEDEIGLDGPDG
QAQPATANYYIVTCCYTCGTTVRLCINSTTTDVRTLQQLLMGTCTIVCPSCAQQ"
CDS 883..2817
/note="unnamed protein product; open reading frame E1"
/codon_start=1
/protein_id="BAA31847.1"
/translation="MDDPEGTNGVGAGCTGWFEVEAVIERRTGDNISDDEDETADDSG
TDLIEFIDDSVQSTTQAEAEAARALFNVQEGVDDINAVCALKRKFAACSESAVEDCVD
RAANVCVSWKYKNKECTHRKRKIIELEDSGYGNTEVETEQMAHQVESQNGDADLNDSE
SSGVGASSDVSSETDVDSCNTVPLQNISNILHNSNTKATLLYKFKEAYGVSFMELVRP
FKSDKTSCTDWCITGYGISPSVAESLKVLIKQHSIYTHLQCLTCDRGIILLLLIRFKC
SKNRLTVAKLMSNLLSIPETCMIIEPPKLRSQACALYWFRTAMSNISDVQGTTPEWID
RLTVLQHSFNDDIFDLSEMIQWAYDNDITDDSDIAYKYAQLADVNSNAAAFLRSNAQA
KIVKDCGVMCRHYKRAEKRGMTMGQWIQSRCEKTNDGGNWRPIVQFLRYQNIEFTAFL
VAFKQFLQGVPKKSCMLLCGPANTGKSYFGMSLIHFLKGCIISYVNSKSHFWLQPLSD
AKLGMIDDVTAISWTYIDDYMRNALDGNDISIDVKHRALVQLKCPPLIITSNTNAGKD
SRWPYLHSRLTVFEFNNPFPFDANGNPVYKINDENWKSFFSRTWCKLGLIEEEDKEND
GGNISTFKCSAGQNPRHIRS"
CDS 2753..3829
/note="unnamed protein product; open reading frame E2"
/codon_start=1
/protein_id="BAA31848.1"
/translation="MEEISARLSAVQDKILDIYEADKNDLTSQIEHWKLIRMECAIMY
TARQMGISHLCHQVVPSLVASKTKAFQVIELQMALETLNASPYKTDEWTLQQTSLEVW
LSEPQKCFKKKGITVTVQYDNDKANTMDYTNWSEIYIIEETTCTLVAGEVDYVGLYYI
HGNEKTYFKYFKEDAKKYSKTQLWEVHVGSRVIVCPTSIPSDQISTTETADPKTTEAT
NNESTQGTKRRRLDLPDSRDNTQYSTKYTDCAVDSRPRGGGLHSTTNCTYKGRNVCSS
KVSPIVHLKGDPNSLKCLRYRLKPFKDLYCNMSSTWHWTSDDKGDKVGIVTVTYTTET
QRQLFLNTVKIPPTVQISTGVMSL"
CDS <3330..3605
/note="unnamed protein product; no ATG start codon;
open reading frame E4"
/codon_start=1
/protein_id="BAA14396.1"
/translation="LYVLHLYLVIKYPLLKLLTQRPPRPPTTKVHRGQSDDDSIYQTP
ETTPSTPQSIQTAPWTVDHEEEDYTVQLTVHTKGGTCVVLKFHLSCI"
CDS 3892..4122
/note="unnamed protein product; open reading frame E5"
/codon_start=1
/protein_id="BAA31849.1"
/translation="MILPIFVVCFILFLCLCIFLRPLVLSISIYAWLLVLVLLLWVSV
GSALRIFFCYLIFLYIPMMCINFHAQYLTQQD"
CDS 4244..5662
/note="unnamed protein product; open reading frame L2"
/codon_start=1
/protein_id="BAA31850.1"
/translation="MRHKRSTRRKRASATQLYQTCKASGTCPPDVIPKVEGTTIADQI
LRYGSLGVFFGGLGIGTGSGTGGRTGYVPLGSTPPSEAIPLQPIRPPVTVDTVGPLDS
SIVSLIEESSFIDAGAPAPSIPTPSGFDITTSADTTPAILNVSSIGESSIQTVSTHLN
PSFTEPSVLRPPAPAEASGHLIFSSPTVSTHSYENIPMDTFVISTDSGNVTSSTPIPG
SRPVARLGLYSRNTQQVKVVDPAFLTSPHRLVTYDNPAFEGFNPEDTLQFQHSDISPA
PDPDFLDIVALHRPALTSRRGTVRYSRVGQKATLRTRSGKQIGAKVHYYQDLSPIQPV
QEQVQQQQQFELQSLNTSVSPYSINDGLYDIYADDADTIHDFQSPLHSHTSFATTRTS
NVSIPLNTGFDTPLVSLEPGPDIASSVTSMSSPFIPISPLTPFNTIIVDGADFMLHPS
YFILRRRRKRFPYFFADVRVAA"
CDS 5565..7139
/note="unnamed protein product; open reading frame L1"
/codon_start=1
/protein_id="BAA31851.1"
/translation="MVLILCCTLAILFCVADVNVFHIFLQMSVWRPSEATVYLPPVPV
SKVVSTDEYVSRTSIYYYAGSSRLLAVGNPYFSIKSPNNNKKVLVPKVSGLQYRVFRV
RLPDPNKFGFPDTSFYNPDTQRLVWACVGLEIGRGQPLGVGVSGHPYLNKFDDTETSN
RYPAQPGSDNRECLSMDYKQTQLCLIGCKPPTGEHWGKGVACNNNAAATDCPPLELFN
SIIEDGDMVDTGFGCMDFGTLQANKSDVPIDICNSTCKYPDYLKMASEPYGDSLFFFL
RREQMFVRHFFNRAGKLGEAVPDDLYIKGSGNTAVIQSSAFFPTPSGSIVTSESQLFN
KPYWLQRAQGHNNGICWGNQLFVTVVDTTRSTNMTLCTEVTKEGTYKNDNFKEYVRHV
EEYDLQFVFQLCKITLTAEIMTYIHTMDSNILEDWQFGLTPPPSASLQDTYRFVTSQA
ITCQKTAPPKEKEDPLNKYTFWEVNLKEKFSADLDQFPLGRKFLLQSGLKAKPRLKRS
APTTRAPSTKRKKVKK"
ORIGIN
1 ctaaactata atgccaaatc ttgtaaaaac tagggtgtaa ccgaaaacgg tctgaccgaa
61 accggtgcat atataaagca gacatttttt ggtaggctac tgcaggacta tgttccagga
121 cgcagaggag aaaccacgga cattgcatga tttgtgtcag gcgttggaga catctgtgca
181 tgaaatcgaa ttgaaatgcg ttgaatgcaa aaagactttg cagcgatctg aggtatatga
241 ctttgtattt gcagatttaa gaatagtgta tagagatgga aatccatttg cagtatgtaa
301 agtgtgctta cgattgctat ctaaaataag tgagtataga cattataatt attcgctata
361 tggagacaca ttagaacaaa cactaaaaaa gtgtttaaat gaaatattaa ttagatgtat
421 tatttgtcaa agaccattgt gtccacaaga aaaaaaaagg catgtggatt taaacaaaag
481 gtttcataat atttcgggtc gttggacagg gcgctgtgca gtgtgttgga gaccccgacg
541 tagacaaaca caagtgtaac ctgtaacaac gccatgagag gaaacaaccc aacgctaaga
601 gaatatattt tagatttaca tcctgaacca actgacctat tctgctatga gcaattatgt
661 gacagctcag acgaggatga aataggcttg gacgggccag atggacaagc acaaccggcc
721 acagctaatt actacattgt aacttgttgt tacacttgtg gcaccacggt tcgtttgtgt
781 atcaacagta caacaaccga cgtacgaacc ctacagcagc tgcttatggg cacatgtacc
841 attgtgtgcc ctagctgtgc acagcaataa acaccatctg caatggatga ccctgaaggt
901 acaaacgggg taggggcggg ctgtactggc tggtttgagg tagaagcggt aatagaacga
961 agaacaggag ataatatttc agatgatgag gacgaaacag cagacgatag tggtacagat
1021 ttaatagagt ttatagatga ttcagtacaa agtactacac aggcagaagc agaggcagcc
1081 cgagcgttgt ttaatgtaca ggaaggggtg gacgatataa atgctgtgtg tgcactaaaa
1141 cgaaagtttg cagcatgctc agaaagtgct gtagaggact gtgtggaccg ggctgcaaat
1201 gtgtgtgtat cgtggaaata taaaaataaa gaatgcacac acagaaaacg aaaaattatt
1261 gagctagaag acagcggata tggcaatact gaagtggaaa ctgagcagat ggcacaccag
1321 gtagaaagcc aaaatggcga cgcagactta aatgactcgg agtctagtgg ggtgggggct
1381 agttcagatg taagcagtga aacggatgta gacagttgta atactgttcc attacaaaat
1441 attagtaata ttctacataa cagtaatact aaagcaacgc tattatataa attcaaagaa
1501 gcttatggag taagttttat ggaattagtt agaccattta aaagtgataa aacaagctgt
1561 acagattggt gtataacagg gtatggaata agtccctccg tagcagaaag tttaaaagta
1621 ctaattaaac agcacagtat atatacacac ctacaatgtt taacgtgtga cagaggaatt
1681 atattattat tgttaattag atttaaatgt agcaaaaata gattaactgt ggcaaaatta
1741 atgagtaatt tactatcaat tcctgaaaca tgtatgatta tcgagccacc aaaattacga
1801 agtcaagcat gtgccttata ttggtttaga acagcaatgt caaatataag tgatgtgcaa
1861 gggacaacac cagaatggat agatagatta acagtgttac agcatagctt taatgatgat
1921 atatttgatt taagtgaaat gatacaatgg gcatatgata atgacattac agatgatagt
1981 gacattgcat ataaatatgc acagttagca gatgttaata gtaatgcagc agcattttta
2041 agaagcaatg cacaagcaaa aatagtaaaa gactgtggcg ttatgtgcag acattataaa
2101 agagcagaaa agcgtggtat gacaatggga caatggatac aaagtaggtg tgaaaaaaca
2161 aatgatggag gtaattggag accaatagta caatttttaa gatatcaaaa tattgaattt
2221 acagcatttt tagttgcatt taaacagttt ttacaaggtg taccaaaaaa aagttgtatg
2281 ttactgtgtg gcccagcaaa tacagggaaa tcatattttg gaatgagttt aatacatttt
2341 ttaaaaggat gcattatttc atatgtaaat tccaaaagtc atttttggtt gcagccatta
2401 tcagatgcta aactaggtat gatagatgat gtaacagcca taagctggac atatatagat
2461 gattatatga gaaatgcatt agatggtaac gacatttcaa tagatgtaaa acatagggca
2521 ttagtacaat taaaatgtcc accattaata attacctcaa atacaaatgc aggcaaagat
2581 tcacgatggc catatttgca cagtagacta acagtatttg aatttaacaa tccatttcca
2641 tttgatgcaa atggtaatcc agtgtataaa ataaatgatg aaaattggaa atcctttttc
2701 tcaaggacgt ggtgcaaatt aggcttaata gaggaagagg acaaggaaaa cgatggagga
2761 aatatcagca cgtttaagtg cagtgcagga caaaatccta gacatatacg aagctgataa
2821 aaatgattta acatcacaaa ttgaacattg gaaactaata cgcatggagt gtgctataat
2881 gtatacagcc agacaaatgg gaatatcaca tttgtgccac caggtggtgc cgtcattggt
2941 agcatcaaag actaaagcgt ttcaagtaat tgaactgcaa atggcattag agacattaaa
3001 tgcatcacca tataaaacag atgaatggac attgcaacaa acaagcttag aagtgtggtt
3061 atcagagcca caaaaatgct ttaaaaaaaa aggcataaca gtaactgtac aatatgacaa
3121 tgataaagca aacacaatgg attatacaaa ttggagtgaa atatatatta ttgaggaaac
3181 aacatgtact ttggtagcag gagaagttga ctatgtgggg ttgtattata tacatggcaa
3241 tgaaaagacg tattttaaat attttaaaga ggatgcaaaa aagtactcta aaacacaatt
3301 atgggaggta catgtgggta gtcgggtaat tgtatgtcct acatctatac ctagtgatca
3361 aatatccact actgaaactg ctgacccaaa gaccaccgag gccaccaaca acgaaagtac
3421 acaggggaca aagcgacgac gactcgattt accagactcc agagacaaca cccagtactc
3481 cacaaagtat acagactgcg ccgtggacag tagaccacga ggaggaggac tacacagtac
3541 aactaactgt acatacaaag ggcggaacgt gtgtagttct aaagtttcac ctatcgtgca
3601 tttaaaaggt gacccaaata gtttaaaatg tttaagatat agattaaaac catttaaaga
3661 cttatactgt aatatgtcat ccacatggca ttggaccagt gatgacaaag gtgacaaagt
3721 aggaattgtt actgtaacat acacaacgga aacacaacga caactgtttt taaacactgt
3781 taaaatacca cccactgtgc aaataagtac tggtgttatg tcattgtaat tgtattgtac
3841 aattactgta tgtaaaccac aagccaatat gtgctgctaa gtgtatatac aatgatatta
3901 cctatttttg ttgtttgttt tatactgttt ttatgcttgt gcattttttt gcggccattg
3961 gtgctatcta tttctatata tgcttggttg ctggtgttgg tgttgctgct ttgggtgtct
4021 gtggggtcgg ctctacgaat ttttttctgt tacttaatat ttttatatat accaatgatg
4081 tgtattaatt ttcatgcaca atacttaacc caacaagact aactgtatac tggttctgca
4141 catggtggta tggtattgta aatatttact gttgtgtgtg ttgtttttat tatttttata
4201 catttactaa taaatacttt tatattttta gcactgtctt attatgagac acaaacggtc
4261 tacaaggcgc aagcgtgcat ctgctacaca actttaccaa acatgcaagg cctcaggcac
4321 ctgcccacct gatgttatac ccaaagttga aggcactact atagcagatc aaatattacg
4381 atatggtagc ttaggggtgt tttttggagg tttaggcatt ggtacagggt cgggtacagg
4441 tggcaggact ggatatgtgc cccttggtag taccccaccg tctgaggcta tacctttaca
4501 gcccatacgt cccccagtta ccgttgatac tgtggggcct ttggattctt ctattgtatc
4561 tttaatagag gaatctagtt ttatagacgc cggtgcacca gccccatcaa ttcccactcc
4621 atctggtttt gatattacca cctctgcaga tactacacct gcaatactta atgtttcctc
4681 tattggagaa tcatctatac aaactgtttc tacacattta aatccctcct ttactgagcc
4741 atccgtactc cgccctcctg cacctgcaga ggcctctgga catttaatat tttcctctcc
4801 tactgttagc acacatagtt atgaaaacat accaatggat acctttgtta tttctactga
4861 cagtggcaat gtcacgtcta gcacacccat tccagggtct cgccctgtgg cacgccttgg
4921 tttatacagt cgcaacaccc aacaagttaa ggttgttgac cctgcttttt taacatctcc
4981 tcatagactt gtaacatatg ataatccagc atttgaaggc tttaaccctg aggacacatt
5041 gcagtttcaa catagtgaca tatcgcctgc tcctgatcct gattttctag atattgttgc
5101 attacacaga cctgcattaa cctctcgcag gggtactgta cgttatagta gggttgggca
5161 aaaggctaca cttcgtactc gcagtggaaa gcaaataggg gctaaagtac attactacca
5221 agacttaagt cccatacagc ctgtccagga acaggtacaa cagcagcaac aatttgaatt
5281 acaatcttta aatacttctg tttctcccta tagtattaat gatggacttt atgatattta
5341 tgctgacgat gctgatacta tacatgattt tcagagtcct ctgcactcac atacgtcctt
5401 tgccaccaca cgtaccagta atgtgtccat accattaaat actggatttg acactcctct
5461 tgtgtcattg gaacctggtc cagacattgc atcttctgta acatctatgt ctagtccatt
5521 tattcctata tctccactaa ctccttttaa taccataatt gtggatggtg ctgattttat
5581 gttgcaccct agctatttta ttttgcgtcg cagacgtaaa cgttttccat atttttttgc
5641 agatgtccgt gtggcggcct agtgaggcca ctgtgtacct gcctcctgtg cctgtgtcta
5701 aggttgtaag cactgatgaa tatgtgtcac gcacaagcat ttattattat gctggcagtt
5761 ccagactttt ggctgttggc aatccatatt tttccatcaa aagtcccaat aacaataaaa
5821 aagtattagt tcccaaggta tcaggcttac agtatagggt ctttagggtg cgtttacctg
5881 atcccaataa atttggtttt cctgatacat ctttttataa ccctgataca caacgtttgg
5941 tctgggcatg tgtaggcctt gaaataggta ggggacagcc attgggtgtt ggcgtaagtg
6001 gtcatcctta tttaaataaa tttgatgaca ctgaaaccag taacagatat cccgcacagc
6061 cagggtctga taacagggaa tgcttatcta tggattataa acaaacacaa ttatgtttaa
6121 ttggctgtaa acctcccact ggtgagcatt ggggtaaagg tgttgcctgt aacaataatg
6181 cagctgctac tgattgtcct ccattggaac tttttaattc tattattgag gatggtgaca
6241 tggtagatac agggtttgga tgcatggact ttggtacatt gcaggctaat aaaagtgatg
6301 tgcctattga tatttgtaac agtacatgca aatatccaga ttatttaaaa atggccagtg
6361 aaccttatgg ggatagtttg ttcttttttc ttagacgtga gcagatgttt gttagacact
6421 tttttaatag ggctggaaaa cttggcgagg ctgtcccgga tgacctttat attaaagggt
6481 ccggtaatac tgcagttatc caaagtagtg cattttttcc aactcctagt ggctctatag
6541 ttacctcaga atcacaatta tttaataagc cttattggct acagcgtgca caaggtcata
6601 acaatggcat ttgctggggc aatcagttat ttgttaccgt ggttgatacc actcgtagca
6661 ctaatatgac attatgcact gaagtaacta aggaaggtac atataaaaat gataatttta
6721 aggaatatgt acgtcatgtt gaagaatatg acttacagtt tgtttttcag ctttgcaaaa
6781 ttacactaac tgcagagata atgacatata tacatactat ggattccaat attttggagg
6841 actggcaatt tggtttaaca cctcctccgt ctgccagttt acaggacaca tatagatttg
6901 ttacctccca ggctattact tgccaaaaaa cagcaccccc taaagaaaag gaagatccat
6961 taaataaata tactttttgg gaggttaact taaaggaaaa gttttctgca gatctagatc
7021 agtttccttt gggacgaaag tttttattac aatcaggcct taaagcaaag cccagactaa
7081 aacgttcggc ccctactacc cgtgcaccat ccaccaaacg caaaaaggtt aaaaaataat
7141 tgttgtggta cttacactat tttattatac atgtttgttt gttttatgta tgtgttgtct
7201 gtttgtttat gtttgtgtat atgttgtatg tgttatgtgt catgtttgtg tacatgttct
7261 atgtccttgt cagtttcctg tttctgtata tatgtaataa actattgtgt gtattgtaaa
7321 ctatttgtat tgtttgggtg tatctatgag taaggtgctg tccctaaatt gccctaccct
7381 gccctgccta ttatgcatac ctatgtaata gtatttgtat gatatgtatt ttatagtttt
7441 taacagtact gcctccattt tactttacct ccattttgtg catgtaaccg atttcggttg
7501 ctggcacaaa cgtgtttttt ttaaactaca atttaaacaa tacagttaat cctttccctt
7561 cctgcactgc ttttgcctat acttgcatat gtgactcata tatacatgca gtgcagttgc
7621 aaaatgttta attatactca tagtttaaac atgcttatag gcacatattt taacttactt
7681 tcaatgctta agtgcagttt tggcttgcac aatagtttgt tatgccaaac tatgtcttgt
7741 aaaagtgact cactaacatt tattgccagg tgtggactaa ccgttttggg tcacattgtt
7801 catgtttcaa cattttatat aata
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