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Tomato brown rugose fruit virus isolate Tom1-Jo, complete genome
GenBank: KT383474.1
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LOCUS KT383474 6393 bp ss-RNA linear VRL 26-MAY-2016
DEFINITION Tomato brown rugose fruit virus isolate Tom1-Jo, complete genome.
ACCESSION KT383474
VERSION KT383474.1
KEYWORDS .
SOURCE Tomato brown rugose fruit virus
ORGANISM Tomato brown rugose fruit virus
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes;
Martellivirales; Virgaviridae; Tobamovirus.
REFERENCE 1 (bases 1 to 6393)
AUTHORS Salem,N., Mansour,A., Ciuffo,M., Falk,B.W. and Turina,M.
TITLE A new tobamovirus infecting tomato crops in Jordan
JOURNAL Arch. Virol. 161 (2), 503-506 (2016)
PUBMED 26586328
REFERENCE 2 (bases 1 to 6393)
AUTHORS Salem,N.M., Mansour,A.N., Ciuffo,M., Falk,B.W. and Turina,M.
TITLE Direct Submission
JOURNAL Submitted (11-AUG-2015) Istituto per la Protezione Sostenibile
Delle Piante, CNR Torino, Italy, Strada delle Cacce 73, Torino, TO
10135, ItalyCOMMENT ##Assembly-Data-START##
Sequencing Technology :: Sanger dideoxy sequencing
##Assembly-Data-END##FEATURES Location/Qualifiers source 1..6393
/organism="Tomato brown rugose fruit virus"
/mol_type="genomic RNA"
/isolate="Tom1-Jo"
/host="tomato; cultivar=Candela"
/db_xref="taxon:1761477"
/country="Jordan"
/collection_date="17-Apr-2015" CDS 77..4924
/codon_start=1
/transl_except=(pos:3425..3427,aa:OTHER)
/product="183 kDa replicase"
/protein_id="ALP48476.1"
/translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVDEFNARDR
RPKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG
SLTYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKVVP
NFQKEAFDRYAETPDEVVCHSTFQTCTHQQVENTGRVYAIALHSIYDIPADEFGAALL
RKNVHVCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSN
ILKYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVNSEQFYS
AMEDAWHYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLDTSKRTRKEV
LVSKDFVFTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQS
LSMTFFLHTKLAVLKDELLISKFSLGPKSVSQHVWDEISLAFGNAFPSIKERLLNRKL
IKVSGDALEIRVPDLYVTFHDRLVTEYKTSVDMPVLDIRKRMEETEVMYNALSELSVL
KESDKFDVDVFSRMCQTLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALKDS
EKASEGALVVTSRDVEEPSMKGSMARGELQLAGLSGDQPESSYTRNEEIESLEQFHMA
TASSLIRKQMSSIVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQ
KFGVLDVATKRWLIKPLAKNHAWGVIETHARKYHVALLEYDEHGVVTCDSWRRVAVSS
ESMVYSDMAKLRTLRRLLRDGEPHVSSAKVVLVDGVPGCGKTKEILSKVNFEEDLILV
PGKQAAEMIKRRANASGIIQATRDNVRTVDSFIMNYGKGTRCQFKRLFIDEGLMLHTG
CVNFLVSMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKIEVDEVETRRTTLRCPAD
ITHYLNRRYEGYVMCTSSVKKSVSQEMVSGAAMINPVSKPLNGKVLTFTQSDKEALLS
RGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSPHVLVALSRHTQTLKYYTVVM
DPLVSIIRDLEKLSSYLLDMYKVDAGTQXQLQVDSVFKGSNLFVAAPKTGDISDMQFY
YDKCLPGNSTMLNNYDAVTMRLTDISLNVKDCILDFSKSVAAPKDPIKPLIPMVRTAA
EMPRQTGLLENLVAMIKRNFNSPELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNV
SLFCRESLNRWLEKQEQVTIGQLADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQSEYP
ALQTIVYHSKKINAIFGPLFSELTRQMLESIDSSKFLFFTRKTPAQIEDFFGDLDSHV
PMDILELDISKYDKSQNEFHCAVEYEIWRRLGLEDFLGEVWKQGHRKTTLKDYTAGIK
TCLWYQRKSGDVTTFIGNTVIIAACLASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDI
QHTANLMWNFEAKLFRKQYGYFCGRYVIHHDRGCIVYYDPLKLISKLGAKHIKDWDHL
EEFRRSLCDVANSLNNCAYYTQLDDAVSEVHKTAPPGSFVYKSLVKYLSDKVLFRSLF
IDGSC" CDS 77..3427
/codon_start=1
/product="126 kDa replicase"
/protein_id="ALP48477.1"
/translation="MAYTQTATTSALLDTVRGNNTLVNDLAKRRLYDTAVDEFNARDR
RPKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRSLELEYLMMQIPYG
SLTYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGNKVVP
NFQKEAFDRYAETPDEVVCHSTFQTCTHQQVENTGRVYAIALHSIYDIPADEFGAALL
RKNVHVCYAAFHFSENLLLEDSHVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSN
ILKYVCKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKGVNSEQFYS
AMEDAWHYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLDTSKRTRKEV
LVSKDFVFTVLNHIRTYQAKALTYSNVLSFVESIRSRVIINGVTARSEWDVDKSLLQS
LSMTFFLHTKLAVLKDELLISKFSLGPKSVSQHVWDEISLAFGNAFPSIKERLLNRKL
IKVSGDALEIRVPDLYVTFHDRLVTEYKTSVDMPVLDIRKRMEETEVMYNALSELSVL
KESDKFDVDVFSRMCQTLEVDPMTAAKVIVAVMSNESGLTLTFEQPTEANVALALKDS
EKASEGALVVTSRDVEEPSMKGSMARGELQLAGLSGDQPESSYTRNEEIESLEQFHMA
TASSLIRKQMSSIVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQ
KFGVLDVATKRWLIKPLAKNHAWGVIETHARKYHVALLEYDEHGVVTCDSWRRVAVSS
ESMVYSDMAKLRTLRRLLRDGEPHVSSAKVVLVDGVPGCGKTKEILSKVNFEEDLILV
PGKQAAEMIKRRANASGIIQATRDNVRTVDSFIMNYGKGTRCQFKRLFIDEGLMLHTG
CVNFLVSMSLCEIAYVYGDTQQIPYINRVSGFPYPAHFAKIEVDEVETRRTTLRCPAD
ITHYLNRRYEGYVMCTSSVKKSVSQEMVSGAAMINPVSKPLNGKVLTFTQSDKEALLS
RGYTDVHTVHEVQGETYADVSLVRLTPTPVSIIAGDSPHVLVALSRHTQTLKYYTVVM
DPLVSIIRDLEKLSSYLLDMYKVDAGTQ" CDS 4911..5711
/codon_start=1
/product="30 kDa movement protein"
/protein_id="ALP48478.1"
/translation="MALVKGKVNINEFIDLSKSEKFLPSMFTPVKSVMISKVDKILVH
EDESLSEVNLLKGVKLIDGGYVHLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEA
TLASYYTAAAKKRFQFKVVPNYNITTKDAEKAVWQVLVNIRNVKIAAGYCPLSLEFVS
VCIVYKNIIKLGLREKITSVTDGGPMELSEEVVDEFMEEVPMSVRLAKFRSKTGKKFS
SKSENNSGNNRPKPDKNQRKEKGLKVRVEKDNLIDNELETYVADSDSY" CDS 5714..6193
/codon_start=1
/product="17.5 kDa coat protein"
/protein_id="ALP48479.1"
/translation="MSYTIATPSQFVFLSSAWADPIELINLCTNSLGNQFQTQQARTT
VQRQFSEVWKPVPQVTVRFPDSGFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQAN
PTTAETLDATRRVDDATVAIRSAINNLVVELVKGTGLYNQSTFESASGLQWSSAPAS"ORIGIN
1 gtatttttgt tttacaacat ataccaacaa caacaaacaa caaacaacaa cattacaatt
61 actatttaca actacaatgg catacacaca gacagctacc acatccgctt tgctcgacac
121 tgtccgaggt aacaatacct tggtcaacga tcttgcgaag cggcgtcttt atgacacagc
181 ggtcgacgag ttcaacgctc gtgatcgcag gcccaaagta aatttttcca aagtaataag
241 tgaggaacag acgcttattg ctactagggc atatccagaa ttccagataa ccttctataa
301 tacgcagaac gccgtgcatt cgcttgccgg tggactacga tccttagaac tggaatatct
361 aatgatgcag atcccgtacg gatcactcac atatgatata ggtgggaatt ttgcatctca
421 tctgttcaaa ggacgggcat atgttcactg ctgtatgccc aatcttgatg tccgcgacat
481 aatgcggcac gaaggccaga aagacagtat agaattatac ctttccaggc ttgagcgggg
541 caacaaagtt gtcccaaatt tccaaaagga agcttttgac agatacgctg aaacgccaga
601 cgaagttgtc tgtcacagta ccttccaaac gtgtacgcac cagcaggtgg aaaacacagg
661 cagggtgtat gctattgcat tgcacagtat atacgatata cctgctgatg aattcggagc
721 ggcactttta aggaaaaatg tccatgtttg ttacgccgcc ttccactttt ccgagaattt
781 acttctcgaa gattcacacg tcaaccttga cgaaatcaac gcgtgttttt cgcgtgatgg
841 agacaagctg actttttctt tcgcatctga gagcacttta aattattgtc atagttattc
901 taatatttta aaatacgtgt gcaaaactta cttcccggca tctaatagag aggtctacat
961 gaaggagttt ttggtcacca gggttaacac ctggttttgt aagttttcta ggatagatac
1021 ttttttatta tacaaggggg tagcccacaa aggtgtaaat agtgagcaat tttacagcgc
1081 aatggaagat gcatggcact acaaaaagac tcttgcaatg tgtaacagcg agaggattct
1141 tcttgaagat tcctcatcgg tcaattactg gttcccaaaa atgagagata tggtcatagt
1201 tcctctattc gacatatctc tcgacaccag taaaaggacc cgcaaagaag tcttagtgtc
1261 aaaggatttt gtattcacag ttttaaatca cattcgcact tatcaagcca aggcacttac
1321 atactccaat gttttatcct ttgtcgaatc aattcgttca agggtaatta tcaacggagt
1381 gactgccagg tctgagtggg atgttgacaa atctcttttg caatccttgt ccatgacatt
1441 tttcttgcat actaagcttg ccgttttaaa agacgaattg ttaatcagca agtttagttt
1501 ggggccaaaa tcagtaagcc agcatgtatg ggatgagatt tccctggctt ttggaaacgc
1561 atttccatcg atcaaggaga gactgctaaa tcggaaacta attaaagtgt cgggagacgc
1621 attagaaatc agggtgcctg atttatatgt gacttttcac gatagattag tgactgagta
1681 caaaacatcg gtggatatgc cagtgcttga tatcagaaag agaatggagg agactgaggt
1741 tatgtacaat gcattgtctg agctatctgt gctcaaggag tcggacaagt tcgacgttga
1801 tgttttttcc cggatgtgcc agactttgga ggtagaccca atgactgcag caaaggttat
1861 tgtggcagtg atgagcaacg agagcggact gactcttaca ttcgaacagc caactgaagc
1921 aaatgtcgca ttggcactta aagattcaga aaaagcctct gagggtgcac tagtggttac
1981 ttctagagat gttgaagaac catccatgaa gggttcaatg gcaagaggag agttacaatt
2041 ggccggtctg tctggagacc aaccagagtc ttcctatact cggaacgagg aaatagagtc
2101 attagagcaa ttccacatgg caacggctag ttcgttaatt cggaaacaga tgagttcgat
2161 tgtgtacacg ggccccatta aagttcagca aatgaaaaac tttattgata gcctggtagc
2221 atcactctct gctgcggtgt cgaacctagt caagatccta aaggatacag ctgctataga
2281 tctcgaaacc cgtcagaagt ttggagtctt agatgttgcg accaaaagat ggttaattaa
2341 acctttagcc aagaatcacg catggggcgt tattgaaaca catgctagga agtaccacgt
2401 tgcacttttg gagtatgatg agcatggagt ggtaacttgc gacagttgga gaagggtggc
2461 cgtgagttct gagtcaatgg tttattctga tatggcaaag ctcagaacac tgaggagatt
2521 attaagagat ggtgagcctc atgtcagcag tgctaaagtc gtcctagttg acggtgtccc
2581 gggttgtgga aagacaaaag agattctctc gaaagtaaat tttgaggaag atctaatctt
2641 agtaccgggt aagcaggctg ctgaaatgat aaagaggcgt gctaatgcgt caggaataat
2701 tcaagccaca agagataatg ttcgtactgt tgattcattt ataatgaatt acggtaaagg
2761 aacacgctgt cagttcaaaa ggttatttat cgacgaaggt ctgatgttgc acactggttg
2821 tgtgaatttt cttgtttcta tgtctctgtg cgaaattgca tatgtttatg gagacacaca
2881 acaaattcca tacatcaaca gagtatccgg ttttccgtac cctgcacatt ttgcaaaaat
2941 agaggttgat gaggtggaaa ctcgcagaac tacgctgcgt tgtccagccg acattaccca
3001 ctatcttaac agaaggtacg aaggatatgt catgtgtaca tcgtcggtta aaaagtcagt
3061 ttctcaggaa atggtgagcg gggccgcaat gatcaatcct gtatctaagc cattgaatgg
3121 gaaagttttg actttcactc agtctgataa agaggcgctg ctttctcgag gatatacgga
3181 cgtccataca gtacatgagg tacaaggtga gacatatgca gatgtgtcgt tggtcagatt
3241 gactccgaca cctgtatcta tcatcgcagg agatagtccg cacgttctcg tagctttgtc
3301 aaggcatacc caaacattga agtattacac cgtagtgatg gatcctcttg taagtataat
3361 tagggattta gaaaaactta gttcttactt gttagatatg tataaagtag atgcagggac
3421 ccaatagcaa ttacaggtag actccgtgtt taaaggttct aatctttttg ttgcagcacc
3481 aaagactgga gatatctcag atatgcaatt ttactatgat aagtgtctcc caggtaatag
3541 caccatgtta aataactatg atgctgttac catgaggttg actgacattt ctcttaatgt
3601 caaagattgc atattggatt tctctaagtc tgtggctgca ccgaaggatc cgatcaaacc
3661 actgattccg atggtacgaa cggcggcaga aatgccacgc cagactggac tattggaaaa
3721 tttggtggcg atgatcaaaa gaaactttaa ttcaccggag ttatcaggaa taatcgacat
3781 tgagaatact gcatctttag tagtagataa attttttgat agttacttgc ttaaagaaaa
3841 aagaaaacca aataaaaatg tttctttatt ttgtagagag tctctcaata gatggttaga
3901 gaagcaggag caagtgacca ttggtcagct tgcagatttt gattttgtgg atcttcctgc
3961 cgttgatcag tacaggcata tgattaaagc gcaacctaag cagaagctgg atacatcaat
4021 tcaaagcgaa tatccggcct tgcagacgat tgtgtatcat tcgaaaaaga tcaacgcaat
4081 cttcggtcct ttgttcagtg agctcacaag gcaaatgctc gaaagcatag actcaagtaa
4141 gtttttgttc tttacaagga agacgccagc tcaaattgag gatttcttcg gagatctcga
4201 tagccatgtc cctatggata tcttggagtt ggatatttcg aagtatgaca aatctcagaa
4261 cgagttccac tgtgcagtag agtatgaaat atggagaaga cttggattag aagattttct
4321 gggagaagtt tggaaacaag gccacaggaa aactactctt aaagattaca cagctggtat
4381 taaaacgtgt ttatggtacc agagaaagag tggggacgtt acaacattca tcggtaatac
4441 ggtgattatt gctgcttgtt tagcttccat gttgcccatg gagaaaataa tcaaaggtgc
4501 attttgcgga gatgacagtt tactatactt cccaaaaggt tgtgagtttc ctgacataca
4561 gcatacagcc aaccttatgt ggaatttcga ggctaagcta ttcagaaagc agtatggtta
4621 tttctgtgga aggtacgtga tacatcatga cagagggtgt attgtttatt atgacccttt
4681 gaagttgatt tctaaacttg gtgctaaaca catcaaggat tgggatcact tagaagagtt
4741 cagaagatcc ctttgtgatg ttgcaaattc gttgaacaac tgtgcgtatt acacgcagtt
4801 ggacgacgct gtgagtgagg tccataaaac cgcacccccg ggttcgtttg tatataaaag
4861 tttagttaaa tatctgtccg ataaggttct ttttagaagt ttgtttatag atggctcttg
4921 ttaagggtaa agtcaatatt aatgagttca tagacttgtc aaaatcagaa aaatttcttc
4981 cgtctatgtt cacacctgtt aagagtgtca tgatctccaa ggttgataag atattggttc
5041 atgaagatga atctttgtcc gaagtcaatt tactcaaagg tgtaaaactc attgatggtg
5101 gctatgtaca tcttgctggt cttgtggtga caggtgaatg gaatttgcca gataattgtc
5161 gtggtggtgt cagtgtctgt ttggtcgata agagaatgga gagagcggac gaggcaactc
5221 ttgcttcata ctataccgca gcggctaaga aaaggtttca gttcaaagtc gttccaaatt
5281 acaacatcac taccaaggac gcagaaaagg cagtttggca agtactagtt aatattagaa
5341 atgttaaaat tgctgcgggt tactgtccgc tgtcattaga atttgtgtca gtgtgtattg
5401 tttataaaaa tattataaaa ctcggtttga gagagaaaat tacgagcgtc acggatggag
5461 ggcccatgga actatcagaa gaagttgttg atgagttcat ggaagaagtc ccgatgtctg
5521 taaggcttgc aaaatttcgt tcgaagaccg gaaaaaagtt tagtagtaaa agtgagaata
5581 atagtggtaa taataggccg aaaccagaca aaaaccaaag gaaggaaaag ggtttaaaag
5641 ttagggttga gaaggataat ttaattgata atgaattgga gacttacgtc gccgattcag
5701 attcgtatta aatatgtctt acacaatcgc aactccatcg caatttgtgt ttttgtcatc
5761 agcatgggcc gaccctatag aattaataaa tttatgtact aattcactag gtaatcagtt
5821 ccaaacacaa caagctagaa caaccgttca acggcaattt agcgaagtgt ggaaacctgt
5881 ccctcaagtc actgttaggt ttcctgacag tggttttaag gtgtataggt acaatgcggt
5941 actagatcct ctagttactg ctttgttagg agctttcgat actagaaata ggattataga
6001 agtcgaaaat caggcgaacc cgacaaccgc cgaaacgtta gacgctactc gtagagtaga
6061 tgacgcaacg gtggctataa ggagcgctat aaataattta gtagtagaat tggtcaaagg
6121 aacaggtttg tacaatcaga gcacatttga aagtgcatcc ggtttacaat ggtcctctgc
6181 acctgcatct tgagataatc gagatgctta aataacagat tgtgtctgca aacacacgtg
6241 gtacgtacga taacgtatag tgtttttccc tccacttaaa tcgaagggta gtgtcttgga
6301 gcgcgcggga caaatgtgta tggttcatac acatccgtag gcacgtaata aagcgaggga
6361 ttcgaattcc cccggaaccc ccggaggggc cca
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