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Bovine parvovirus-1 strain Abinanti, complete genome
GenBank: DQ335247.1
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LOCUS DQ335247 5515 bp DNA linear VRL 16-OCT-2007
DEFINITION Bovine parvovirus-1 strain Abinanti, complete genome.
ACCESSION DQ335247
VERSION DQ335247.1
KEYWORDS .
SOURCE Bovine parvovirus 1
ORGANISM Bovine parvovirus 1
Viruses; Monodnaviria; Shotokuvirae; Cossaviricota;
Quintoviricetes; Piccovirales; Parvoviridae; Parvovirinae;
Bocaparvovirus.
REFERENCE 1 (bases 1 to 5515)
AUTHORS Qiu,J., Cheng,F., Johnson,F.B. and Pintel,D.
TITLE The transcription profile of the bocavirus bovine parvovirus is
unlike those of previously characterized parvoviruses
JOURNAL J. Virol. 81 (21), 12080-12085 (2007)
PUBMED 17715221
REFERENCE 2 (bases 1 to 5515)
AUTHORS Qiu,J., Pintel,D. and Johnson,F.B.
TITLE Direct Submission
JOURNAL Submitted (16-DEC-2005) Dept. of Molecular Microbiology and
Immunology, University of Missouri-Columbia, 1201 Rollins Street,
Columbia, MO 65211, USA
FEATURES Location/Qualifiers
source 1..5515
/organism="Bovine parvovirus 1"
/mol_type="genomic DNA"
/strain="Abinanti"
/db_xref="taxon:2839036"
CDS 336..2918
/note="nonstructural protein 1"
/codon_start=1
/product="NS-1"
/protein_id="ABC69727.1"
/translation="MATGGLAKWVGAVQAFGHPSWSYVIKLRHGHVTMIERGFYELCG
GENWNMLHELPGDNGLLEMWESRESMLESWSPGDGHSWAMAWAGWRAARETMQRRQYV
NEPTFSCWSQSELGENGWHVHIIIGGPGLTRQNAAISRSILCTSFFKHLLITIRQRTH
APYTVLSRDELNAWNWLQKIAQRVMRGDMDDIVDILKCRKANGTLVAQAINGTEFITR
YMLPKNRKVANTVLTRHTTPEQSYDSTWGKTYGFAVCNGETVSEFTRKDLWKVLYNIY
TAHPAENMLNSNPSVWGDLPRVSANRIDADDAEARSRPIKLSRKQKIMAEVIQRATDG
LLLTYNDLVVHLSDLMLMLEGMPGGSKTAEQLLTMIHIKLCAKYNAYEFMLMKTPATQ
NMNPGAPHYDCQGNLVFKLLNLQGYNPWQVGHWLVMMLSKKTGKRNSTLFYGPASTGK
TNLAKAICHAVGLYGCVNHNNKQFPFNDAPNKMILWWEECIMTTDYVEAAKCVLGGTH
VRVDVKHKDSRELPQIPVLLSSNHDVYTVVGGNATFGVHAAPLKERITQMNFMKQLPN
TFGEITPGMISNWLSHCAHIHQEHLSLEGFAIKWDVQSVGNSFPLQTLCPGHSQNWTF
SENGVCWHCGGFIQPTPESDTDSDGDPDPDGAVAGDSDTSANSESTVSFSSNDSGLGS
VTSSAPSVPDRAEEIEEIPSECLEWMREEVDRLSAHDINSLAHQATGFILDPIPEEPE
ERERDLAREDAEPEASTSHTPATKRARVEEGEPWDGTQPITEGDWIDFESRQKRRRLE
REEKGGEDEDMEVQESDPSAWGEKLGIVEKPGEEPIVLYCFETLPESDEEGDSDKENK
THTV"
CDS 1185..2918
/note="nonstructural protein 2"
/codon_start=1
/product="NS-2"
/protein_id="ABC69730.1"
/translation="MLNSNPSVWGDLPRVSANRIDADDAEARSRPIKLSRKQKIMAEV
IQRATDGLLLTYNDLVVHLSDLMLMLEGMPGGSKTAEQLLTMIHIKLCAKYNAYEFML
MKTPATQNMNPGAPHYDCQGNLVFKLLNLQGYNPWQVGHWLVMMLSKKTGKRNSTLFY
GPASTGKTNLAKAICHAVGLYGCVNHNNKQFPFNDAPNKMILWWEECIMTTDYVEAAK
CVLGGTHVRVDVKHKDSRELPQIPVLLSSNHDVYTVVGGNATFGVHAAPLKERITQMN
FMKQLPNTFGEITPGMISNWLSHCAHIHQEHLSLEGFAIKWDVQSVGNSFPLQTLCPG
HSQNWTFSENGVCWHCGGFIQPTPESDTDSDGDPDPDGAVAGDSDTSANSESTVSFSS
NDSGLGSVTSSAPSVPDRAEEIEEIPSECLEWMREEVDRLSAHDINSLAHQATGFILD
PIPEEPEERERDLAREDAEPEASTSHTPATKRARVEEGEPWDGTQPITEGDWIDFESR
QKRRRLEREEKGGEDEDMEVQESDPSAWGEKLGIVEKPGEEPIVLYCFETLPESDEEG
DSDKENKTHTV"
CDS 2659..3300
/note="nonstructural protein"
/codon_start=1
/product="NP"
/protein_id="ABC69728.1"
/translation="MERSRSPRETGSTSSRDKSDADWSERRREERTRTWKSRSPIRAH
GERSWGSWRSREKNQSSSTASRPYQKATRKETATKKTKHTPFNVFSAHRALSKTDLQF
CGFYWHSTRLASKGTNEIFNGLKQSFQSKAIDGKLDWEGVGELLFEQKKCLDTWYRNM
MYHFALGGDCEKCNYWDDVYKKHLANVDTYSVAEEITDSEMLEAAEAVDAANQ"
CDS 3284..5305
/note="capsid protein"
/codon_start=1
/product="VP1"
/protein_id="ABC69729.1"
/translation="MPPTNKANSKKGLTLPGYNYLGPFNSLFAGAPVNKADAAARKHD
FGYSDLLKEGKNPYLYFNTHDQNLIDELKDDTSFGGKLARGVFQIKKALAPALPGTSK
GGDKALKRKLYFARSNKGAKKANREPAPSTSNQQNMEVSNDIPNDEAGNQPIELATRS
VGGSGSVGGGGRGGSGVGYSTGGWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVL
NTGDTAHRQYAITTPWSYFNFNQYSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIK
QIMTDGAMGTVYNNDLTAGMHIFCDGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYI
PAPISVVDNNTTNTVEEHLLKGVPLYMLENSDHEVLRTGESTEFTFNFGDCEWIENNI
TFSMPQMMYNPLVRSRRIYSYSGPNNQTSNAFQNAALRTSNWMSGPGIARGTHNATLQ
TQSAGALVTMVTNGADVSGVGAVRVGYSTDPIYGGQQPDSDLLRLRYSASAAEGQQNP
ILENAARHTFTREARTKLITGSNGADGNYKEWWMLPNQMWDSAPISRYNPIWVKVPRV
NRKTLLDTQDGSIPMSHPPGTIFIKLARIPVPGNGDSFLNIYVTGQVSCEVVWEVEKR
GTKNWRPEYMHSATNMSVDAYTINNAGVYAGAVQNADVMQTRFNHHKVL"
CDS 3695..5305
/note="capsid protein"
/codon_start=1
/product="VP2"
/protein_id="ABC69731.1"
/translation="MEVSNDIPNDEAGNQPIELATRSVGGSGSVGGGGRGGSGVGYST
GGWTGGTIFSENIVVTKNTRQFICDIKNGHLYKSEVLNTGDTAHRQYAITTPWSYFNF
NQYSSHFSPNDWQHLVNDYERFRPKAMIVRVYNLQIKQIMTDGAMGTVYNNDLTAGMH
IFCDGDHRYPYVQHPWDDQCMPELPNSIWELPQYAYIPAPISVVDNNTTNTVEEHLLK
GVPLYMLENSDHEVLRTGESTEFTFNFGDCEWIENNITFSMPQMMYNPLVRSRRIYSY
SGPNNQTSNAFQNAALRTSNWMSGPGIARGTHNATLQTQSAGALVTMVTNGADVSGVG
AVRVGYSTDPIYGGQQPDSDLLRLRYSASAAEGQQNPILENAARHTFTREARTKLITG
SNGADGNYKEWWMLPNQMWDSAPISRYNPIWVKVPRVNRKTLLDTQDGSIPMSHPPGT
IFIKLARIPVPGNGDSFLNIYVTGQVSCEVVWEVEKRGTKNWRPEYMHSATNMSVDAY
TINNAGVYAGAVQNADVMQTRFNHHKVL"
ORIGIN
1 atatttttat tactcatctc ctgcatccac catattggct gcccgggcca ataatgcgag
61 cggctgcgcc gctgcgcgct tcgcgcgcgc attgtaaggc ctaatcgggc agccaatatg
121 gtggatgcag gagatgagta ataaaaatat agagcctgtg attaagcgag acgtcataga
181 cgaggacagg tggaccaatc acattaaagg tcaagctaat gattaaccag ggggtggaga
241 ctagagggta tataaagaga aaaccaggaa gtcaaaaatc agactgctgc agacctcgac
301 agagaacaca cgtctctgcg ctctggtgag tgaagatggc tactgggggg ctagctaaat
361 gggtgggagc tgtgcaggcc tttgggcatc catcttggtc ctacgtcatc aagctgcgtc
421 atggtcacgt gaccatgatt gagagaggct tctatgaact gtgtggggga gagaattgga
481 atatgctcca cgaactacct ggagacaatg gactgttaga gatgtgggag agcagagaaa
541 gcatgctaga gagttggagt ccaggagatg gacacagttg ggccatggca tgggcagggt
601 ggagagctgc tagagagacc atgcagagaa gacagtatgt caacgagccg acatttagtt
661 gctggagcca gagcgagctg ggggagaacg gatggcatgt gcatataatt attgggggtc
721 cgggactgac cagacaaaat gcagccatct cgaggtctat actctgcact tcattcttta
781 aacaccttct gatcactatt agacagagaa cacacgctcc atacactgtg ctatctagag
841 atgagctgaa tgcatggaac tggctacaaa agatagctca gagagtgatg aggggagaca
901 tggatgacat tgtagacatc ctgaagtgca gaaaggccaa cggcacgctg gtagctcagg
961 cgatcaacgg cacagaattc atcactagat atatgctacc taaaaataga aaggtggcta
1021 acacagtctt aacgagacac actacaccag aacagagcta cgactctact tggggtaaaa
1081 catatggctt cgcggtctgt aacggcgaga cggtctccga gttcacaagg aaagatctct
1141 ggaaagtcct ttacaacatc tacacagcgc atccagctga gaacatgctc aactcaaacc
1201 caagcgtgtg gggagacctt ccaagggtaa gcgctaaccg catcgacgcg gacgacgcgg
1261 aggccagatc aaggccgatt aaattatcca gaaaacaaaa aatcatggct gaagtgattc
1321 agcgagccac tgatgggtta ctgttaacct acaatgattt ggtagtacat ttgtctgatt
1381 tgatgttaat gcttgagggc atgccgggcg gaagtaaaac tgctgaacag ctgcttacca
1441 tgattcacat taaattgtgt gccaaataca atgcttatga atttatgctg atgaaaactc
1501 ctgctactca aaacatgaat ccgggagcac cacactatga ctgccaggga aacttggtct
1561 ttaagctgct caacttacaa ggatacaatc cttggcaagt ggggcactgg ttagtcatga
1621 tgctttctaa aaaaacgggg aaaagaaatt ctactctttt ctatgggcca gcgagcacgg
1681 ggaaaaccaa tctcgctaag gccatctgcc acgcagtggg gctatacggg tgcgtgaacc
1741 acaacaacaa acagtttcct tttaacgatg cacccaacaa aatgatcctg tggtgggagg
1801 aatgcatcat gactacagac tacgtagagg cagcaaagtg tgtgctcggg ggaactcacg
1861 tcagggtaga cgtgaaacac aaagattcta gggagctgcc tcagattcca gtgcttcttt
1921 cgagcaacca cgacgtatat accgtcgtgg ggggaaacgc cacgtttgga gttcacgcgg
1981 caccgctcaa agaaagaatc actcagatga attttatgaa gcagctccct aacacttttg
2041 gagaaatcac tccgggcatg atttcaaatt ggctgtctca ctgcgcgcac attcaccaag
2101 aacatctgtc gctggaaggc tttgctatta aatgggacgt gcagagcgtg ggaaacagct
2161 ttcctttaca gactctctgt cctggccatt cacagaactg gacattcagc gaaaacggcg
2221 tctgctggca ctgcggaggt ttcatccagc caacaccaga atcagacact gactctgacg
2281 gagatcctga ccctgacggt gctgttgctg gcgatagcga tacttctgct aacagtgagt
2341 ctacagtatc gtttagcagt aacgactcag gactaggatc cgtcacttca tcagctccat
2401 cggtacctga cagagccgag gaaatagagg agattcccag tgagtgcttg gagtggatgc
2461 gggaggaggt tgatagactg agcgctcacg acatcaactc actcgctcac caagctactg
2521 ggttcatcct agatcccatt ccagaagaac cagaagaaag ggagcgggat ctggctagag
2581 aggacgccga gccagaagca tcgacgagtc acactccagc taccaaaaga gctcgcgtgg
2641 aggaaggtga gccgtgggat ggaacgcagc cgatcaccga gggagactgg atcgacttcg
2701 agtcgagaca aaagcgacgc agactggagc gagaggagaa gggaggagag gacgaggaca
2761 tggaagtcca ggagtccgat ccgagcgcat ggggagagaa gctggggatc gtggagaagc
2821 cgggagaaga accaatcgtc ctctactgct tcgagacctt accagaaagc gacgaggaag
2881 gagacagcga caaagaaaac aaaacacaca ccgtttaacg tgtttagcgc tcaccgagca
2941 ctctccaaaa cagatctcca gttctgcggc ttctactggc actcaactcg actagccagc
3001 aaaggaacta atgaaatatt caatggacta aaacaatcat ttcaatcaaa agcgattgac
3061 gggaaacttg attgggaagg ggtgggagaa ttgttatttg agcaaaaaaa atgtttagac
3121 acttggtata gaaacatgat gtatcacttt gccttggggg gtgattgtga aaaatgtaat
3181 tactgggatg atgtgtacaa aaaacacttg gctaatgtag acacttattc tgttgcagaa
3241 gagataactg attctgaaat gctggaagcg gcagaagctg ttgatgccgc caaccaataa
3301 agctaattca aaaaaaggcc tgacattacc tggctacaat tatttgggtc cattcaattc
3361 tttattcgcg ggcgcgccag tgaataaagc agacgcggca gcgcgaaaac acgactttgg
3421 ctattctgac ttgttaaagg agggaaagaa tccctaccta tactttaaca cacacgacca
3481 aaacctcata gacgaactca aagacgacac ttcctttggc gggaaactcg caagaggagt
3541 gtttcaaata aaaaaagcac tggcgccagc tctgccaggc acatccaaag gaggagacaa
3601 agccttaaaa agaaagctat actttgcgcg ctcaaacaag ggcgccaaaa aagcaaacag
3661 agaacctgca ccaagcacat ccaatcaaca gaacatggag gtatcaaatg atatacctaa
3721 cgacgaggct ggcaatcagc caattgaact ggcgactcgg tccgtggggg gatcgggttc
3781 ggtgggtggc ggcggccgag ggggctctgg agtgggctac tcaactggcg gatggacggg
3841 gggcaccata tttagcgaga acattgtggt cactaaaaac actcgccagt ttatatgtga
3901 catcaaaaac ggccatctct ataaaagcga ggtgcttaac actggtgaca cggctcacag
3961 gcaatatgcc attaccactc cgtggagcta ttttaatttc aaccagtaca gctctcactt
4021 tagtcctaat gactggcaac acctggtcaa cgactacgag agattcagac caaaagccat
4081 gatagtgaga gtatacaacc tgcagataaa acagatcatg acagacggag ccatggggac
4141 cgtctacaac aatgatctga ctgcaggcat gcacatcttc tgcgacgggg atcacagata
4201 cccatacgta cagcatccat gggatgacca atgcatgcca gagctgccaa acagcatatg
4261 ggagctacca caatatgctt acataccagc tccaatatca gtcgtagaca acaacactac
4321 aaacacagta gaagaacacc tactgaaagg agtacctcta tacatgctgg aaaactctga
4381 ccacgaagtg ctacgcacgg gagaatctac agaatttaca ttcaactttg gagactgcga
4441 atggatagaa aacaacatca cattcagcat gcctcagatg atgtacaatc cactggtcag
4501 aagcagaaga atctactcat acagcggacc aaacaaccaa acaagcaacg cattccagaa
4561 tgcagcactg agaaccagca actggatgtc aggaccagga atcgcaaggg gaacacacaa
4621 cgcaactctg caaacacaat ctgcaggggc actggtgacc atggtaacta acggagcaga
4681 cgtctccggg gtgggagccg tgcgagtagg atactcgacg gatccaatct acgggggaca
4741 gcaaccagat tcagacctgc tgagactgag atactccgca tcggcagcag aaggacaaca
4801 aaacccaata ttggaaaacg cagcaagaca cacttttacc agagaggcga gaacgaaact
4861 gatcacggga tccaacggag cagacggaaa ctacaaagaa tggtggatgc taccaaacca
4921 gatgtgggac tcggcgccta tctcgagata caatccaata tgggtcaagg taccgagagt
4981 caacagaaag acactcctgg acacgcaaga cggatccatt ccaatgtcac atccgccagg
5041 aaccatcttc atcaagctag caagaattcc agtaccagga aacggagact cgttcctcaa
5101 catctacgtc accggacaag tctcatgcga agtcgtctgg gaggtagaaa agaggggcac
5161 caaaaattgg agaccggaat acatgcactc agcaacaaac atgtccgtcg atgcatacac
5221 catcaacaac gccggcgtct acgcaggcgc ggtacaaaac gcagacgtca tgcagacaag
5281 attcaatcac cacaaagtcc tgtagggggc gcaagaaaaa agacactcta tacacccgct
5341 ttatatattt ttacactgat tcactctttc cgccatcttt tagttgtatt cttagttatc
5401 aataaaggcg cggagcgcca taaaaaatta tgtcatatgg cgcttcgcgc ctttattgat
5461 aactaagaat acaactaaaa gatggcggaa agagtgaatc cgtgtaaaaa tattt
//
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